Content Differences
This encompasses the addition or removal of segments (uncensored or remastered BD editions), differences in multiple adaptations from the same source, and remade or rebooted series.
Examples
Remastered
Re:Zero kara Hajimeru Isekai Seikatsu
An edited version of the series received a rebroadcast, featuring the extension of some scenes and the inclusion of new ones.
Uncensored
Kaifuku Jutsushi no Yarinaoshi
The TV broadcast version was heavily censored due to explicit content whereas the Blu-ray/DVD version is completely uncensored.
Differences in Multiple Adaptations from the Same Source/Remake
Neon Genesis Evangelion versus Rebuild of Evangelion
The new adaptation focuses less on psychological drama and more on action scenes as well as fan service.
Differences in characters' portrayal and their interactions; new characters included in the remake.
Code Geass/Code Geass R2 versus Code Geass I - III Movie Trilogy + Sequel
The movies recap a portion of the TV series' events, but eventually branch off and present a new story. As a result, Code Geass: Fukkatsu no Lelouch is completely unique to the movie trilogy.
The movies cut out some story arcs and changed scenes accordingly.
The circumstances of certain characters have changed due to the adjustments to the story in the movies.
Fruits Basket versus Fruits Basket 1st Season/Fruits Basket 2nd Season
The first adaptation is less faithful to the manga source; it contains more lighthearted fillers, skips over the backstories of two relevant characters, and features an anime-original ending.
Additionally, the order of certain parts of the story (such as the introduction of some characters) is different in the two adaptations.
Reboot
Dororo to Hyakkimaru versus Dororo
Differences in plot segments, ending, characters, some of the characters' portrayal/motivations, and interactions.
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